PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 359aa    MW: 38161.2 Da    PI: 6.0732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.65.1e-11962151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeyss 51
                     k ie++ +r+ t+ +Rr g+  K +   +LC++++ ++ ++s+   g++ +++s
  LPERR01G35620.1  9 KLIESEKKRKATYKNRRDGLVQKVSQFATLCGVDAFLVCYGSDvagGEVTTWPS 62
                     569**************************************9877799999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-6162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.4150IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-15383IPR002100Transcription factor, MADS-box
CDDcd002661.60E-16381No hitNo description
PfamPF003193.8E-131160IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPRTKLVLKL IESEKKRKAT YKNRRDGLVQ KVSQFATLCG VDAFLVCYGS DVAGGEVTTW  60
PSDRATVVER IEKLRALRPE KIRQVHTTGS LLREDLAKQQ RALIKVQQCG VYDILMPSSG  120
YRFDELSLDG LNALYDALSV TLEMAHRRMA TLRCGGGGDV VVGGHDDDDA SSSAALVAVP  180
APAPYAVALP DHNSAVGPFD FPFVDAAHYY YPVLHDTMPM PLPVYHHLPS SCLSYPMPPP  240
PPPLAAAAFD QGFMDSSSLY AAANVVHGGA GLGNPLLDDH SHGFAAGVGY GDDLLAHGFA  300
IAAGAGAGYD LDPRMSAADV WQMNAISNPN DGVAFQLQND LKGILPGGGN SGSNLRAGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V9950.0A0A0D9V995_9ORYZ; Uncharacterized protein
STRINGORGLA01G0349700.11e-126(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-16M-type_MADS family protein